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P.tigris_Pti1_mat1.1

Organism name:
Panthera tigris (tiger)
Isolate:
Pti1
Sex:
female
BioSample:
SAMN17054330
BioProject:
PRJNA684344
Submitter:
Texas A&M University
Date:
2021/05/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018350195.2 (latest)
RefSeq assembly accession:
GCF_018350195.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAEQMW01
Assembly method:
NextDenovo v. 2.2-beta.0
Expected final version:
yes
Genome coverage:
78.0x
Sequencing technology:
PacBio Sequel 2

IDs: 10542631 [UID] 27963788 [GenBank] 28191738 [RefSeq]

See Genome Information for Panthera tigris

Pathogen Detection Resources

There are 6 assemblies for this organism

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History (Show revision history)

Comment

This is the maternal pseudohaplotype assembly created from the genome sequence of the F1 male progeny (isolate LxT-3; BioSample SAMN17054328) of a cross between a female Panthera tigris (isolate Pti1; BioSample SAMN17054330) and male Panthera leo (isolate Ple1; BioSample SAMN17054329).

Global statistics

Total sequence length2,408,695,688
Total ungapped length2,408,685,588
Gaps between scaffolds0
Number of scaffolds75
Scaffold N50146,942,463
Scaffold L507
Number of contigs140
Contig N5074,391,967
Contig L5012
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)131

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_018350205.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A1CM031431.1=NC_056660.13
Chromosome A2CM031432.1=NC_056661.12
Chromosome A3CM031433.1=NC_056662.111
Chromosome B1CM031434.1=NC_056663.11
Chromosome B2CM031435.1=NC_056664.12
Chromosome B3CM031436.1=NC_056665.10
Chromosome B4CM031437.1=NC_056666.12
Chromosome C1CM031438.1=NC_056667.12
Chromosome C2CM031439.1=NC_056668.12
Chromosome D1CM031440.1=NC_056669.10
Chromosome D2CM031441.1=NC_056670.10
Chromosome D3CM031442.1=NC_056671.17
Chromosome D4CM031443.1=NC_056672.11
Chromosome E1CM031444.1=NC_056673.12
Chromosome E2CM031445.1=NC_056674.10
Chromosome E3CM031446.1=NC_056675.10
Chromosome F2CM031447.1=NC_056676.11
Chromosome F3CM031448.1=NC_056678.112
Chromosome XCM031430.1=NC_056677.14
unplacedn/an/an/a3

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,408,678,698742,408,668,598146,942,463650
Chromosome A1AllAssembled moleculeUnlocalized scaffolds239,014,368238,220,823793,545413239,013,868238,220,323793,545238,220,823238,220,823282,857110000
Chromosome A2AllAssembled moleculeUnlocalized scaffolds167,967,522167,824,101143,421312167,966,722167,823,301143,421167,824,101167,824,10173,635440000
Chromosome A3AllAssembled moleculeUnlocalized scaffolds141,046,574139,420,0201,626,55412111141,046,074139,419,5201,626,554139,420,020139,420,020168,844110000
Chromosome B1AllAssembled moleculeUnlocalized scaffolds204,313,782204,240,96272,820211204,313,482204,240,66272,820204,240,962204,240,96272,820330000
Chromosome B2AllAssembled moleculeUnlocalized scaffolds151,438,299151,172,648265,651312151,437,999151,172,348265,651151,172,648151,172,648186,291330000
Chromosome B3Assembled molecule146,942,4631146,941,663146,942,46340
Chromosome B4AllAssembled moleculeUnlocalized scaffolds141,055,389140,883,259172,130312141,055,289140,883,159172,130140,883,259140,883,259115,078110000
Chromosome C1AllAssembled moleculeUnlocalized scaffolds220,027,777219,880,392147,385312220,027,377219,879,992147,385219,880,392219,880,392104,828440000
Chromosome C2AllAssembled moleculeUnlocalized scaffolds157,821,071157,485,960335,111312157,820,971157,485,860335,111157,485,960157,485,960179,394110000
Chromosome D1Assembled molecule114,653,5601114,652,860114,653,56030
Chromosome D2Assembled molecule86,999,983186,999,48386,999,98310
Chromosome D3AllAssembled moleculeUnlocalized scaffolds95,220,00794,015,9551,204,05281795,218,70794,014,6551,204,05294,015,95594,015,955216,987990000
Chromosome D4AllAssembled moleculeUnlocalized scaffolds93,786,89493,600,330186,56421193,786,89493,600,330186,56493,600,33093,600,330186,564000000
Chromosome E1AllAssembled moleculeUnlocalized scaffolds61,718,94761,289,036429,91131261,717,84761,287,936429,91161,289,03661,289,036234,386770000
Chromosome E2Assembled molecule61,603,977161,603,97761,603,97700
Chromosome E3Assembled molecule41,508,437141,508,13741,508,43730
Chromosome F2AllAssembled moleculeUnlocalized scaffolds82,985,89382,905,70780,18621182,985,79382,905,60780,18682,905,70782,905,70780,186110000
Chromosome F3AllAssembled moleculeUnlocalized scaffolds72,261,34769,613,1072,648,2401311272,260,64769,612,9072,647,74069,613,10769,613,107192,410321000
Chromosome XAllAssembled moleculeUnlocalized scaffolds128,084,688127,706,282378,406514128,083,088127,704,682378,406127,706,282127,706,28281,39116160000
unplacedAssembled molecule227,7203227,72057,95000
MoleculeTotal
Length
Mitochondrion MT16,990