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Source database (GenBank or RefSeq) File type

P.leo_Ple1_pat1.1

Organism name:

Panthera leo (lion)

Isolate:

Ple1

Sex:

male

BioSample:

SAMN17054329

BioProject:

PRJNA684340

Submitter:

Texas A&M University

Date:

2021/05/13

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018350215.1 (latest)

RefSeq assembly accession:

GCF_018350215.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAEQMX01

Assembly method:

NextDenovo v. 2.2-beta.0

Expected final version:

yes

Genome coverage:

76.0x

Sequencing technology:

PacBio Sequel 2

IDs: 10039181 [UID] 26708008 [GenBank] 28185028 [RefSeq]

See Genome Information for Panthera leo

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018350215.1	≠	GCF_018350215.1	P.leo_Ple1_pat1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

This is the paternal pseudohaplotype assembly created from the genome sequence of the F1 male progeny (isolate LxT-3; BioSample SAMN17054328) of a cross between a female Panthera tigris (isolate Pti1; BioSample SAMN17054330) and male Panthera leo (isolate Ple1; BioSample SAMN17054329).

Global statistics

Total sequence length	2,297,568,983
Total ungapped length	2,297,559,483
Gaps between scaffolds	0
Number of scaffolds	54
Scaffold N50	147,402,474
Scaffold L50	7
Number of contigs	109
Contig N50	77,781,637
Contig L50	11
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	99

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM031450.1	=	NC_056679.1	0
Chromosome A2	CM031451.1	=	NC_056680.1	2
Chromosome A3	CM031452.1	=	NC_056681.1	1
Chromosome B1	CM031453.1	=	NC_056682.1	1
Chromosome B2	CM031454.1	=	NC_056683.1	0
Chromosome B3	CM031455.1	=	NC_056684.1	1
Chromosome B4	CM031456.1	=	NC_056685.1	0
Chromosome C1	CM031457.1	=	NC_056686.1	2
Chromosome C2	CM031458.1	=	NC_056687.1	1
Chromosome D1	CM031459.1	=	NC_056688.1	1
Chromosome D2	CM031460.1	=	NC_056689.1	1
Chromosome D3	CM031461.1	=	NC_056690.1	0
Chromosome D4	CM031462.1	=	NC_056691.1	0
Chromosome E1	CM031463.1	=	NC_056692.1	5
Chromosome E2	CM031464.1	=	NC_056693.1	0
Chromosome E3	CM031465.1	=	NC_056694.1	0
Chromosome F2	CM031466.1	=	NC_056695.1	0
Chromosome F3	CM031467.1	=	NC_056696.1	1
Chromosome Y	CM031449.1	=	NC_056697.1	14
unplaced	n/a	n/a	n/a	4

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	2,297,552,363	53	2,297,542,863	147,402,474	55	0
Chromosome A1	Assembled molecule	238,914,584	1	238,913,484	238,914,584	3	0
Chromosome A2	AllAssembled moleculeUnlocalized scaffolds	168,576,365167,961,581614,784	312	168,575,465167,960,681614,784	167,961,581167,961,581450,657	550	000
Chromosome A3	AllAssembled moleculeUnlocalized scaffolds	140,047,563139,988,24559,318	211	140,047,063139,987,74559,318	139,988,245139,988,24559,318	110	000
Chromosome B1	AllAssembled moleculeUnlocalized scaffolds	205,217,251205,061,116156,135	211	205,216,951205,060,816156,135	205,061,116205,061,116156,135	330	000
Chromosome B2	Assembled molecule	151,445,352	1	151,444,452	151,445,352	5	0
Chromosome B3	AllAssembled moleculeUnlocalized scaffolds	147,841,537147,402,474439,063	211	147,840,837147,401,774439,063	147,402,474147,402,474439,063	770	000
Chromosome B4	Assembled molecule	141,504,389	1	141,503,889	141,504,389	1	0
Chromosome C1	AllAssembled moleculeUnlocalized scaffolds	220,808,948220,622,163186,785	312	220,808,548220,621,763186,785	220,622,163220,622,16397,791	440	000
Chromosome C2	AllAssembled moleculeUnlocalized scaffolds	158,423,560158,330,21293,348	211	158,423,360158,330,01293,348	158,330,212158,330,21293,348	220	000
Chromosome D1	AllAssembled moleculeUnlocalized scaffolds	115,400,172115,343,37656,796	211	115,399,872115,343,07656,796	115,343,376115,343,37656,796	330	000
Chromosome D2	AllAssembled moleculeUnlocalized scaffolds	87,476,10487,363,192112,912	211	87,475,80487,362,892112,912	87,363,19287,363,192112,912	330	000
Chromosome D3	Assembled molecule	94,488,104	1	94,487,504	94,488,104	6	0
Chromosome D4	Assembled molecule	94,013,389	1	94,012,889	94,013,389	1	0
Chromosome E1	AllAssembled moleculeUnlocalized scaffolds	62,236,41161,380,078856,333	615	62,236,01161,379,678856,333	61,380,07861,380,078243,141	440	000
Chromosome E2	Assembled molecule	61,787,680	1	61,787,680	61,787,680	0	0
Chromosome E3	Assembled molecule	41,728,670	1	41,727,870	41,728,670	4	0
Chromosome F2	Assembled molecule	83,205,205	1	83,205,105	83,205,205	1	0
Chromosome F3	AllAssembled moleculeUnlocalized scaffolds	70,786,54269,419,2971,367,245	211	70,786,04269,419,2971,366,745	69,419,29769,419,2971,367,245	101	000
Chromosome Y	AllAssembled moleculeUnlocalized scaffolds	12,920,7198,609,7024,311,017	15114	12,920,7198,609,7024,311,017	8,609,7028,609,702393,145	000	000
unplaced	Assembled molecule	729,818	4	729,318	408,784	1	0

Assembly

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P.leo_Ple1_pat1.1

See Genome Information for Panthera leo

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear