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NCSU_Asbu1

Organism name:
Haplochromis burtoni (Burton's mouthbrooder)
Infraspecific name:
Strain: Fernald_Lab_line
Sex:
female
BioSample:
SAMN17845830
BioProject:
PRJNA701062
Submitter:
Reade Roberts Lab, North Carolina State University
Date:
2021/05/19
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018398535.1 (latest)
RefSeq assembly accession:
GCF_018398535.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAGKPV01
Assembly method:
PBSuite v. 15.8.24
Expected final version:
yes
Reference guided assembly:
GCA_000239415.1
Genome coverage:
20.7x
Sequencing technology:
PacBio; Illumina NextSeq

IDs: 10074151 [UID] 26779848 [GenBank] 27364188 [RefSeq]

See Genome Information for Haplochromis burtoni

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length854,588,855
Total ungapped length760,862,406
Gaps between scaffolds0
Number of scaffolds7,421
Scaffold N501,410,599
Scaffold L50165
Number of contigs39,827
Contig N5047,717
Contig L504,400
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)7,421

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced854,572,2727,420760,845,8231,410,59932,4060
MoleculeTotal
Length
Mitochondrion MT16,583