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Source database (GenBank or RefSeq) File type

Zo_v1.1

Organism name:

Zingiber officinale (ginger)

Infraspecific name:

Cultivar: Zhangliang

BioSample:

SAMN15647981

BioProject:

PRJNA647255

Submitter:

Ori-Gene Co. Ltd.

Date:

2021/05/21

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018446385.1 (latest)

RefSeq assembly accession:

GCF_018446385.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 8 unlocalized scaffolds on chromosome MT
Different: chromosome Pltd.

Data displayed for RefSeq version

WGS Project:

JACMSC01

Assembly method:

SMARTDENOVO v. 1

Expected final version:

yes

Genome coverage:

100.0x

Sequencing technology:

Oxford Nanopore PromethION

IDs: 10096071 [UID] 26833068 [GenBank] 27388878 [RefSeq]

See Genome Information for Zingiber officinale

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018446385.1	≠	GCF_018446385.1	Zo_v1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	3,090,429,014
Total ungapped length	3,090,362,271
Gaps between scaffolds	0
Number of scaffolds	211
Scaffold N50	141,269,392
Scaffold L50	10
Number of contigs	1,109
Contig N50	6,396,877
Contig L50	139
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	211

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1B	CM031511.1	=	NC_055986.1	0
Chromosome 1A	CM031510.1	=	NC_055987.1	0
Chromosome 2A	CM031512.1	=	NC_055988.1	0
Chromosome 2B	CM031513.1	=	NC_055989.1	0
Chromosome 3A	CM031514.1	=	NC_055990.1	0
Chromosome 3B	CM031515.1	=	NC_055991.1	0
Chromosome 4A	CM031516.1	=	NC_055992.1	0
Chromosome 4B	CM031517.1	=	NC_055993.1	0
Chromosome 5A	CM031518.1	=	NC_055994.1	0
Chromosome 5B	CM031519.1	=	NC_055995.1	0
Chromosome 6B	CM031521.1	=	NC_055996.1	0
Chromosome 6A	CM031520.1	=	NC_055997.1	0
Chromosome 7A	CM031522.1	=	NC_055998.1	0
Chromosome 7B	CM031523.1	=	NC_055999.1	0
Chromosome 8A	CM031524.1	=	NC_056000.1	0
Chromosome 8B	CM031525.1	=	NC_056001.1	0
Chromosome 9A	CM031526.1	=	NC_056002.1	0
Chromosome 9B	CM031527.1	=	NC_056003.1	0
Chromosome 10A	CM031506.1	=	NC_056004.1	0
Chromosome 10B	CM031507.1	=	NC_056005.1	0
Chromosome 11A	CM031508.1	=	NC_056006.1	0
Chromosome 11B	CM031509.1	=	NC_056007.1	0
unplaced	n/a	n/a	n/a	188

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,090,266,393	210	3,090,199,650	141,269,392	898
Chromosome 1B	171,592,823	1	171,591,084	171,592,823	34
Chromosome 1A	194,392,478	1	194,389,584	194,392,478	42
Chromosome 2A	178,304,392	1	178,302,117	178,304,392	38
Chromosome 2B	156,697,907	1	156,695,964	156,697,907	34
Chromosome 3A	165,904,803	1	165,902,264	165,904,803	39
Chromosome 3B	134,210,104	1	134,204,811	134,210,104	67
Chromosome 4A	163,535,463	1	163,533,607	163,535,463	29
Chromosome 4B	141,013,095	1	141,011,082	141,013,095	30
Chromosome 5A	152,382,109	1	152,379,929	152,382,109	28
Chromosome 5B	140,800,694	1	140,794,093	140,800,694	74
Chromosome 6B	137,712,093	1	137,708,024	137,712,093	50
Chromosome 6A	151,157,472	1	151,151,261	151,157,472	65
Chromosome 7A	142,854,748	1	142,851,242	142,854,748	48
Chromosome 7B	120,890,498	1	120,887,472	120,890,498	41
Chromosome 8A	141,269,392	1	141,265,517	141,269,392	51
Chromosome 8B	115,052,570	1	115,047,331	115,052,570	61
Chromosome 9A	137,703,343	1	137,699,498	137,703,343	54
Chromosome 9B	120,735,021	1	120,731,836	120,735,021	38
Chromosome 10A	99,747,443	1	99,746,256	99,747,443	23
Chromosome 10B	97,102,896	1	97,101,908	97,102,896	20
Chromosome 11A	97,714,083	1	97,712,969	97,714,083	17
Chromosome 11B	88,687,397	1	88,686,969	88,687,397	7
unplaced	40,805,569	188	40,804,832	429,113	8

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Zo_v1.1

See Genome Information for Zingiber officinale

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear