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UCI_dwil_1.1

Organism name:
Drosophila willistoni (flies)
Isolate:
14030-0811.24
Sex:
pooled male and female
BioSample:
SAMN16513131
BioProject:
PRJNA670571
Submitter:
University of California Irvine
Date:
2021/06/16
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_018902025.2 (latest)
RefSeq assembly accession:
GCF_018902025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFEWB01
Assembly method:
Canu v. 1.4; Pilon v. 1.2
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
PacBio RS; Illumina

IDs: 12106471 [UID] 31738648 [GenBank] 32051878 [RefSeq]

See Genome Information for Drosophila willistoni

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

In February 2022 4 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length246,985,538
Total ungapped length246,901,181
Gaps between scaffolds0
Number of scaffolds744
Scaffold N509,374,611
Scaffold L507
Number of contigs749
Contig N509,079,863
Contig L508
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)744

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018902165.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2Ln/an/an/a4
Chromosome 2Rn/an/an/a2
Chromosome 3RCM032166.1=NC_061086.10
Chromosome XLn/an/an/a2
Chromosome XRn/an/an/a6
unplacedn/an/an/a729

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule246,985,538744246,901,1819,374,61150
Chromosome 2LAllAssembled moleculeUnlocalized scaffolds38,289,455038,289,45540438,289,381038,289,38120,399,607020,399,607101000
Chromosome 2RAllAssembled moleculeUnlocalized scaffolds32,232,279032,232,27920232,232,279032,232,27924,296,367024,296,367000000
Chromosome 3RAssembled molecule33,854,152133,854,15233,854,15200
Chromosome XLAllAssembled moleculeUnlocalized scaffolds25,125,570025,125,57020225,125,471025,125,47115,674,760015,674,760101000
Chromosome XRAllAssembled moleculeUnlocalized scaffolds33,365,786033,365,78660633,365,786033,365,7869,299,27509,299,275000000
unplacedAssembled molecule84,118,29672984,034,112169,88130