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ASM2042438v2

Organism name:
Procambarus clarkii (red swamp crayfish)
Infraspecific name:
Strain: Jiangsu
BioSample:
SAMN19018814
BioProject:
PRJNA727411
Submitter:
Freshwater Fisheries Research Institute of Jiangsu Province, Nanjing 210017, China
Date:
2021/10/12
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020424385.2 (latest)
RefSeq assembly accession:
GCF_020424385.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAIWQB01
Assembly method:
LACHESIS v. may-2020
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio RS

IDs: 11685891 [UID] 30763818 [GenBank] 30767888 [RefSeq]

See Genome Information for Procambarus clarkii

Pathogen Detection Resources

History (Show revision history)

Comment

In December 2021 4 sequences (JAIWQB010010274.1, JAIWQB010012329.1, JAIWQB010020414.1, JAIWQB010022857.1) were suppressed because they are contaminants.

Global statistics

Total sequence length2,735,361,232
Total ungapped length2,734,581,948
Gaps between scaffolds0
Number of scaffolds24,239
Scaffold N5017,011,522
Scaffold L5056
Number of contigs31,697
Contig N50217,730
Contig L503,094
Total number of chromosomes and plasmids95
Number of component sequences (WGS or clone)24,239

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020424395.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG01CM035473.1=NC_059571.10
Linkage Group LG02CM035474.1=NC_059572.10
Linkage Group LG03CM035475.1=NC_059573.10
Linkage Group LG04CM035476.1=NC_059574.10
Linkage Group LG05CM035477.1=NC_059575.10
Linkage Group LG06CM035478.1=NC_059576.10
Linkage Group LG07CM035479.1=NC_059577.10
Linkage Group LG08CM035480.1=NC_059578.10
Linkage Group LG09CM035481.1=NC_059579.10
Linkage Group LG10CM035482.1=NC_059580.10
Linkage Group LG11CM035483.1=NC_059581.10
Linkage Group LG12CM035484.1=NC_059582.10
Linkage Group LG13CM035485.1=NC_059583.10
Linkage Group LG14CM035486.1=NC_059584.10
Linkage Group LG15CM035487.1=NC_059585.10
Linkage Group LG16CM035488.1=NC_059586.10
Linkage Group LG17CM035489.1=NC_059587.10
Linkage Group LG18CM035490.1=NC_059588.10
Linkage Group LG19CM035491.1=NC_059589.10
Linkage Group LG20CM035492.1=NC_059590.10
Linkage Group LG21CM035493.1=NC_059591.10
Linkage Group LG22CM035494.1=NC_059592.10
Linkage Group LG23CM035495.1=NC_059593.10
Linkage Group LG24CM035496.1=NC_059594.10
Linkage Group LG25CM035497.1=NC_059595.10
Linkage Group LG26CM035498.1=NC_059596.10
Linkage Group LG27CM035499.1=NC_059597.10
Linkage Group LG28CM035500.1=NC_059598.10
Linkage Group LG29CM035501.1=NC_059599.10
Linkage Group LG30CM035502.1=NC_059600.10
Linkage Group LG31CM035503.1=NC_059601.10
Linkage Group LG32CM035504.1=NC_059602.10
Linkage Group LG33CM035505.1=NC_059603.10
Linkage Group LG34CM035506.1=NC_059604.10
Linkage Group LG35CM035507.1=NC_059605.10
Linkage Group LG36CM035508.1=NC_059606.10
Linkage Group LG37CM035509.1=NC_059607.10
Linkage Group LG38CM035510.1=NC_059608.10
Linkage Group LG39CM035511.1=NC_059609.10
Linkage Group LG40CM035512.1=NC_059610.10
Linkage Group LG41CM035513.1=NC_059611.10
Linkage Group LG42CM035514.1=NC_059612.10
Linkage Group LG43CM035515.1=NC_059613.10
Linkage Group LG44CM035516.1=NC_059614.10
Linkage Group LG45CM035517.1=NC_059615.10
Linkage Group LG46CM035518.1=NC_059616.10
Linkage Group LG47CM035519.1=NC_059617.10
Linkage Group LG48CM035520.1=NC_059618.10
Linkage Group LG49CM035521.1=NC_059619.10
Linkage Group LG50CM035522.1=NC_059620.10
Linkage Group LG51CM035523.1=NC_059621.10
Linkage Group LG52CM035524.1=NC_059622.10
Linkage Group LG53CM035525.1=NC_059623.10
Linkage Group LG54CM035526.1=NC_059624.10
Linkage Group LG55CM035527.1=NC_059625.10
Linkage Group LG56CM035528.1=NC_059626.10
Linkage Group LG57CM035529.1=NC_059627.10
Linkage Group LG58CM035530.1=NC_059628.10
Linkage Group LG59CM035531.1=NC_059629.10
Linkage Group LG60CM035532.1=NC_059630.10
Linkage Group LG61CM035533.1=NC_059631.10
Linkage Group LG62CM035534.1=NC_059632.10
Linkage Group LG63CM035535.1=NC_059633.10
Linkage Group LG64CM035536.1=NC_059634.10
Linkage Group LG65CM035537.1=NC_059635.10
Linkage Group LG66CM035538.1=NC_059636.10
Linkage Group LG67CM035539.1=NC_059637.10
Linkage Group LG68CM035540.1=NC_059638.10
Linkage Group LG69CM035541.1=NC_059639.10
Linkage Group LG70CM035542.1=NC_059640.10
Linkage Group LG71CM035543.1=NC_059641.10
Linkage Group LG72CM035544.1=NC_059642.10
Linkage Group LG73CM035545.1=NC_059643.10
Linkage Group LG74CM035546.1=NC_059644.10
Linkage Group LG75CM035547.1=NC_059645.10
Linkage Group LG76CM035548.1=NC_059646.10
Linkage Group LG77CM035549.1=NC_059647.10
Linkage Group LG78CM035550.1=NC_059648.10
Linkage Group LG79CM035551.1=NC_059649.10
Linkage Group LG80CM035552.1=NC_059650.10
Linkage Group LG81CM035553.1=NC_059651.10
Linkage Group LG82CM035554.1=NC_059652.10
Linkage Group LG83CM035555.1=NC_059653.10
Linkage Group LG84CM035556.1=NC_059654.10
Linkage Group LG85CM035557.1=NC_059655.10
Linkage Group LG86CM035558.1=NC_059656.10
Linkage Group LG87CM035559.1=NC_059657.10
Linkage Group LG88CM035560.1=NC_059658.10
Linkage Group LG89CM035561.1=NC_059659.10
Linkage Group LG90CM035562.1=NC_059660.10
Linkage Group LG91CM035563.1=NC_059661.10
Linkage Group LG92CM035564.1=NC_059662.10
Linkage Group LG93CM035565.1=NC_059663.10
Linkage Group LG94CM035566.1=NC_059664.10
unplacedn/an/an/a24,144

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,735,345,30424,2382,734,566,02017,011,5227,4580
Linkage Group LG0134,494,426134,482,62634,494,4261180
Linkage Group LG0215,032,988115,025,58815,032,988740
Linkage Group LG0337,843,480137,829,18037,843,4801430
Linkage Group LG0435,366,105135,352,50535,366,1051360
Linkage Group LG0517,888,349117,881,94917,888,349640
Linkage Group LG0629,810,335129,798,03529,810,3351230
Linkage Group LG0732,766,465132,753,56532,766,4651290
Linkage Group LG0827,798,368127,784,76827,798,3681360
Linkage Group LG0928,670,345128,659,14528,670,3451120
Linkage Group LG1030,137,450130,125,75030,137,4501170
Linkage Group LG1131,046,548131,033,44831,046,5481310
Linkage Group LG1231,759,195131,745,89531,759,1951330
Linkage Group LG1330,177,393130,167,59330,177,393980
Linkage Group LG1424,441,618124,429,21824,441,6181240
Linkage Group LG1529,857,121129,844,82129,857,1211230
Linkage Group LG1628,432,585128,421,28528,432,5851130
Linkage Group LG1724,189,889124,180,78924,189,889910
Linkage Group LG1825,219,281125,209,88125,219,281940
Linkage Group LG1928,158,291128,146,19128,158,2911210
Linkage Group LG2023,200,437123,190,33723,200,4371010
Linkage Group LG2125,183,483125,173,58325,183,483990
Linkage Group LG2224,646,201124,635,40124,646,2011080
Linkage Group LG2327,410,661127,400,06127,410,6611060
Linkage Group LG2428,416,586128,404,48628,416,5861210
Linkage Group LG2527,298,942127,289,24227,298,942970
Linkage Group LG2624,008,852123,998,75224,008,8521010
Linkage Group LG2726,857,048126,846,94826,857,0481010
Linkage Group LG2816,753,838116,744,33816,753,838950
Linkage Group LG2921,852,967121,843,56721,852,967940
Linkage Group LG3025,879,344125,869,54425,879,344980
Linkage Group LG3125,108,018125,098,61825,108,018940
Linkage Group LG3226,229,902126,218,40226,229,9021150
Linkage Group LG3322,512,445122,484,54422,512,4451180
Linkage Group LG3425,195,060125,184,66025,195,0601040
Linkage Group LG3521,937,138121,912,05521,937,138770
Linkage Group LG3625,224,104125,215,70425,224,104840
Linkage Group LG3724,508,711124,498,41124,508,7111030
Linkage Group LG3823,372,999123,364,99923,372,999800
Linkage Group LG3914,426,505114,421,70514,426,505480
Linkage Group LG4013,331,495113,327,39513,331,495410
Linkage Group LG4125,463,547125,456,04725,463,547750
Linkage Group LG4221,005,880120,995,88021,005,8801000
Linkage Group LG4320,823,892120,815,49220,823,892840
Linkage Group LG4420,794,454120,785,25420,794,454920
Linkage Group LG4522,620,906122,610,50622,620,9061040
Linkage Group LG4622,522,350122,512,95022,522,350940
Linkage Group LG4722,595,121122,587,22122,595,121790
Linkage Group LG4817,786,615117,779,61517,786,615700
Linkage Group LG4919,379,010119,371,21019,379,010780
Linkage Group LG5020,389,853120,381,65320,389,853820
Linkage Group LG5121,916,356121,911,05621,916,356530
Linkage Group LG5216,924,220116,917,72016,924,220650
Linkage Group LG5318,874,009118,866,60918,874,009740
Linkage Group LG5413,537,015113,528,81513,537,015820
Linkage Group LG5518,750,760118,743,76018,750,760700
Linkage Group LG5618,391,626118,385,62618,391,626600
Linkage Group LG5717,692,667117,685,96717,692,667670
Linkage Group LG5819,141,545119,135,24519,141,545630
Linkage Group LG5920,217,563120,211,56320,217,563600
Linkage Group LG6015,406,002115,399,20215,406,002680
Linkage Group LG6116,034,613116,028,01316,034,613660
Linkage Group LG6217,579,972117,573,47217,579,972650
Linkage Group LG6315,293,584115,287,58415,293,584600
Linkage Group LG6415,480,490115,472,09015,480,490840
Linkage Group LG6515,451,797115,444,29715,451,797750
Linkage Group LG6616,773,506116,766,40616,773,506710
Linkage Group LG6714,335,120114,330,02014,335,120510
Linkage Group LG6817,011,522117,005,22217,011,522630
Linkage Group LG6916,111,107116,105,80716,111,107530
Linkage Group LG7015,380,865115,374,16515,380,865670
Linkage Group LG7111,168,094111,161,59411,168,094650
Linkage Group LG7215,471,385115,464,78515,471,385660
Linkage Group LG7315,665,960115,660,56015,665,960540
Linkage Group LG7413,285,978113,281,67813,285,978430
Linkage Group LG7513,665,356113,661,85613,665,356350
Linkage Group LG7614,239,296114,232,19614,239,296710
Linkage Group LG7712,481,664112,476,96412,481,664470
Linkage Group LG7815,397,537115,391,63715,397,537590
Linkage Group LG7913,308,973113,304,47313,308,973450
Linkage Group LG808,391,48818,387,2888,391,488420
Linkage Group LG8113,720,559113,715,65913,720,559490
Linkage Group LG8211,282,663111,278,56311,282,663410
Linkage Group LG8312,939,638112,934,13812,939,638550
Linkage Group LG8420,079,489120,072,08920,079,489740
Linkage Group LG8511,423,946111,421,14611,423,946280
Linkage Group LG8611,404,725111,400,12511,404,725460
Linkage Group LG8712,018,647112,014,64712,018,647400
Linkage Group LG889,778,19419,774,5949,778,194360
Linkage Group LG8910,285,286110,281,68610,285,286360
Linkage Group LG908,058,39118,055,3918,058,391300
Linkage Group LG919,071,00719,066,7079,071,007430
Linkage Group LG9210,049,848110,046,14810,049,848370
Linkage Group LG936,951,41016,948,0106,951,410340
Linkage Group LG9411,106,052111,101,85211,106,052420
unplaced853,968,78324,144853,968,78354,80900
MoleculeTotal
Length
Mitochondrion MT15,928