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ASM2080920v1

Organism name:
Bacillus thuringiensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: GC-91
BioSample:
SAMN21214333
BioProject:
PRJNA757250
Submitter:
University of Zurich
Date:
2021/11/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_020809205.1 (latest)
RefSeq assembly accession:
GCF_020809205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler, Canu v. 0.4.8
Expected final version:
yes
Genome coverage:
40x, 50x
Sequencing technology:
Illumina MiniSeq, Oxford Nanopore

IDs: 11411431 [UID] 30053688 [GenBank] 30085288 [RefSeq]

See Genome Information for Bacillus thuringiensis

There are 1337 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_020809205.1-RS_2024_04_10
Annotation Date::04/10/2024 23:38:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,020
CDSs (total)::6,865
Genes (coding)::6,531
CDSs (with protein)::6,531
Genes (RNA)::155
rRNAs::14, 14, 14 (5S, 16S, 23S)
complete rRNAs::14, 14, 14 (5S, 16S, 23S)
tRNAs::108
ncRNAs::5
Pseudo Genes (total)::334
CDSs (without protein)::334
Pseudo Genes (ambiguous residues)::0 of 334
Pseudo Genes (frameshifted)::120 of 334
Pseudo Genes (incomplete)::222 of 334
Pseudo Genes (internal stop)::91 of 334
Pseudo Genes (multiple problems)::76 of 334
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,756,558
Total ungapped length6,756,558
Total number of chromosomes and plasmids12

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020809215.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP083144.1=NZ_CP083144.1
Plasmid pCH_186-aCP083145.1=NZ_CP083145.1
Plasmid pCH_186-bCP083146.1=NZ_CP083146.1
Plasmid pCH_186-cCP083147.1=NZ_CP083147.1
Plasmid pCH_186-dCP083148.1=NZ_CP083148.1
Plasmid pCH_186-eCP083149.1=NZ_CP083149.1
Plasmid pCH_186-fCP083150.1=NZ_CP083150.1
Plasmid pCH_186-gCP083151.1=NZ_CP083151.1
Plasmid pCH_186-hCP083152.1=NZ_CP083152.1
Plasmid pCH_186-iCP083153.1=NZ_CP083153.1
Plasmid pCH_186-jCP083154.1=NZ_CP083154.1
Plasmid pCH_186-kCP083155.1=NZ_CP083155.1

Assembly statistics

MoleculeTotal
Length
All6,756,558
Chromosome 5,705,790
Plasmid pCH_186-a412,303
Plasmid pCH_186-b295,447
Plasmid pCH_186-c84,990
Plasmid pCH_186-d84,195
Plasmid pCH_186-e69,396
Plasmid pCH_186-f42,790
Plasmid pCH_186-g22,041
Plasmid pCH_186-h14,876
Plasmid pCH_186-i10,657
Plasmid pCH_186-j8,538
Plasmid pCH_186-k5,535

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus thuringiensisBacillus thuringiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002119445.1Bacillus thuringiensissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094295.1Bacillus cereustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.3375.6180.88
Best-match type97.1470.1887.31

ANI result

Taxonomy check statusBest match statusComment
OKsynonym-matchna