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Source database (GenBank or RefSeq) File type

ASM2253813v1

Organism name:: Escherichia coli (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: S-2-10h
BioSample:: SAMN26292120
BioProject:: PRJNA810903
Submitter:: Northwest A&F University
Date:: 2022/03/09
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_022538135.1 (latest)
RefSeq assembly accession:: GCF_022538135.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAKZAR01
Assembly method:: Velvet v. 2.0.2
Expected final version:: yes
Genome coverage:: 100.0x
Sequencing technology:: Illumina HiSeq

IDs: 12302711 [UID] 32220778 [GenBank] 32235448 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 268300 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022538135.1	=	GCF_022538135.1	ASM2253813v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from pig

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::03/04/2022 14:43:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,712
CDSs (total)::4,610
Genes (coding)::4,357
CDSs (with protein)::4,357
Genes (RNA)::102
rRNAs::6, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::3, 2, 2 (5S, 16S, 23S)
tRNAs::80
ncRNAs::10
Pseudo Genes (total)::253
CDSs (without protein)::253
Pseudo Genes (ambiguous residues)::0 of 253
Pseudo Genes (frameshifted)::58 of 253
Pseudo Genes (incomplete)::178 of 253
Pseudo Genes (internal stop)::44 of 253
Pseudo Genes (multiple problems)::24 of 253
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,711,919
Total ungapped length	4,711,919
Gaps between scaffolds	0
Number of scaffolds	229
Scaffold N50	52,844
Scaffold L50	26
Number of contigs	229
Contig N50	52,844
Contig L50	26
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	229

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Plasmid unnamed	n/a	n/a	n/a	1
unplaced	n/a	n/a	n/a	228

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	4,711,919	229	4,711,919	52,844	0	0
Plasmid unnamed	AllAssembled moleculeUnlocalized scaffolds	16,898016,898	101	16,898016,898	16,898016,898	000	000
unplaced	Assembled molecule	4,695,021	228	4,695,021	52,844	0	0

	ANI	Query coverage	Subject coverage
Declared type	98.90	88.01	77.87
Best-match type	98.90	88.01	77.87

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ASM2253813v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 268300 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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