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ASM2334375v1

  • Anomalous assembly.
Organism name:
Candida oxycetoniae (budding yeasts)
Infraspecific name:
Strain: CBS 10844
BioSample:
SAMN19014466
BioProject:
PRJNA726927
Submitter:
Barcelona Supercomputing Center
Date:
2022/05/12
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_023343755.1 (replaced)
RefSeq assembly accession:
GCF_023343755.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 3 unlocalized scaffolds on chromosome MT
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAHUZD01
Assembly method:
SOAPdenovo v. 2.0.4; Redundans v. 0.13c
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina HiSeq

IDs: 12708731 [UID] 33246308 [GenBank] 34698158 [RefSeq]

See Genome Information for Candida oxycetoniae

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In December 2023 45 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length12,878,827
Total ungapped length12,872,333
Gaps between scaffolds0
Number of scaffolds148
Scaffold N50215,035
Scaffold L5019
Number of contigs228
Contig N50159,303
Contig L5022
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)148

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced12,816,23414712,809,740215,035800
MoleculeTotal
Length
Mitochondrion MT62,593