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NHGRI_mSymSyn1-v2.0_pri

Organism name:
Symphalangus syndactylus (siamang)
Isolate:
Jambi
Sex:
male
BioSample:
SAMN30216103
BioProject:
PRJNA916729
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2024/01/05
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028878055.2 (latest)
RefSeq assembly accession:
GCF_028878055.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAQQLG02
Assembly method:
Verkko v. 1.4
Expected final version:
no
Genome coverage:
76.0x
Sequencing technology:
PacBio Sequel; Oxford Nanopore PromethION
Linked assembly:
GCA_028878085.2 (alternate pseudohaplotype of diploid)

IDs: 20607091 [UID] 52035008 [GenBank] 53522778 [RefSeq]

See Genome Information for Symphalangus syndactylus

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Number of regions with alternate loci or patches2
Total sequence length3,262,904,224
Total ungapped length3,261,904,224
Total number of chromosomes and plasmids27

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear

Regions

NameLocation
PAR1X:14544597-16738876
PAR2Y:6840956-9043855
Assembly Unit: Primary Assembly (GCF_028878065.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM054509.2=NC_072423.2
Chromosome 2CM054510.2=NC_072424.2
Chromosome 3CM054511.2=NC_072425.2
Chromosome 4CM054512.2=NC_072426.2
Chromosome 5CM054513.2=NC_072427.2
Chromosome 6CM054514.2=NC_072428.2
Chromosome 7CM054515.2=NC_072429.2
Chromosome 8CM054516.2=NC_072430.2
Chromosome 9CM054517.2=NC_072431.2
Chromosome 10CM054518.2=NC_072432.2
Chromosome 11CM054519.2=NC_072433.2
Chromosome 12CM054520.2=NC_072434.2
Chromosome 13CM054521.2=NC_072435.2
Chromosome 14CM054522.2=NC_072436.2
Chromosome 15CM054523.2=NC_072437.2
Chromosome 16CM054524.2=NC_072438.2
Chromosome 17CM054525.2=NC_072439.2
Chromosome 18CM054526.2=NC_072440.2
Chromosome 19CM054527.2=NC_072441.2
Chromosome 20CM054528.2=NC_072442.2
Chromosome 21CM054529.2=NC_072443.2
Chromosome 22CM054530.2=NC_072444.2
Chromosome 23CM054531.2=NC_072445.2
Chromosome 24CM054532.2=NC_072446.2
Chromosome XCM054533.2=NC_072447.2
Chromosome YCM054534.2=NC_072448.2

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All3,262,887,708263,261,887,708146,713,73310
Chromosome 1167,654,7341167,654,734167,654,73400
Chromosome 2154,079,7871154,079,787154,079,78700
Chromosome 3160,054,5561160,054,556160,054,55600
Chromosome 4167,252,2031167,252,203167,252,20300
Chromosome 5161,705,7971161,705,797161,705,79700
Chromosome 6154,842,6091154,842,609154,842,60900
Chromosome 7154,492,9861154,492,986154,492,98600
Chromosome 8153,293,0091153,293,009153,293,00900
Chromosome 9147,755,5511147,755,551147,755,55100
Chromosome 10141,396,4251141,396,425141,396,42500
Chromosome 11142,585,2161142,585,216142,585,21600
Chromosome 1298,029,838198,029,83898,029,83800
Chromosome 13136,159,6551136,159,655136,159,65500
Chromosome 14124,962,4291124,962,429124,962,42900
Chromosome 15120,311,6501120,311,650120,311,65000
Chromosome 16111,298,3031111,298,303111,298,30300
Chromosome 17106,261,9081106,261,908106,261,90800
Chromosome 18111,959,8051111,959,805111,959,80500
Chromosome 19146,713,7331146,713,733146,713,73300
Chromosome 2072,981,805172,981,80572,981,80500
Chromosome 2195,096,135194,096,13595,096,13510
Chromosome 2280,751,072180,751,07280,751,07200
Chromosome 2378,312,223178,312,22378,312,22300
Chromosome 2479,424,044179,424,04479,424,04400
Chromosome X165,573,8991165,573,899165,573,89900
Chromosome Y29,938,336129,938,33629,938,33600
MoleculeTotal
Length
Mitochondrion MT16,516
Region
Name		LocationScaffold
Count		Total
Length		Ungapped
Length		Scaffold
N50		Spanned
Gaps