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ASM2977421v1

Organism name:
Edwardsiella tarda (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SC002
BioSample:
SAMN32741787
BioProject:
PRJNA923850
Submitter:
Hainan University
Date:
2023/04/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_029774215.1 (latest)
RefSeq assembly accession:
GCF_029774215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. February-2021
Expected final version:
yes
Genome coverage:
80.0x
Sequencing technology:
Oxford Nanopore PromethION; Illumina NovaSeq

IDs: 16449541 [UID] 42176368 [GenBank] 42260518 [RefSeq]

See Genome Information for Edwardsiella tarda

Pathogen Detection Resources

There are 31 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Jiping Zheng lab, School of Life Sciences, Hainan University China

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_029774215.1-RS_2024_04_16
Annotation Date::04/16/2024 10:09:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,854
CDSs (total)::3,713
Genes (coding)::3,571
CDSs (with protein)::3,571
Genes (RNA)::141
rRNAs::10, 9, 9 (5S, 16S, 23S)
complete rRNAs::10, 9, 9 (5S, 16S, 23S)
tRNAs::107
ncRNAs::6
Pseudo Genes (total)::142
CDSs (without protein)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::34 of 142
Pseudo Genes (incomplete)::121 of 142
Pseudo Genes (internal stop)::26 of 142
Pseudo Genes (multiple problems)::30 of 142
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,131,220
Total ungapped length4,131,220
Total number of chromosomes and plasmids5

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_029774225.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP116675.1=NZ_CP116675.1
Plasmid pEtSC002-1CP116676.1=NZ_CP116676.1
Plasmid pEtSC002-2CP116677.1=NZ_CP116677.1
Plasmid pEtSC002-3CP116678.1=NZ_CP116678.1
Plasmid pEtSC002-4CP116679.1=NZ_CP116679.1

Assembly statistics

MoleculeTotal
Length
All4,131,220
Chromosome 3,662,469
Plasmid pEtSC002-1114,035
Plasmid pEtSC002-2134,101
Plasmid pEtSC002-3154,848
Plasmid pEtSC002-465,767

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Edwardsiella tardaEdwardsiella tarda

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900447455.1Edwardsiella tardatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900447455.1Edwardsiella tardatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3483.9694.23
Best-match type99.3483.9694.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna