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ASM3309606v1

Organism name:
Streptococcus pneumoniae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: PZ900700006
BioSample:
SAMD00547690
BioProject:
PRJDB14459
Submitter:
National Institute of Infectious Diseases
Date:
2023/07/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_033096065.1 (latest)
RefSeq assembly accession:
GCF_033096065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.9
Genome coverage:
1098x
Sequencing technology:
Illumina Nextseq500; Gridion

IDs: 19429661 [UID] 49404188 [GenBank] 49497858 [RefSeq]

See Genome Information for Streptococcus pneumoniae

There are 46012 assemblies for this organism

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History (Show revision history)

Comment

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/


The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/01/2023 09:06:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,289
CDSs (total)::2,215
Genes (coding)::2,024
CDSs (with protein)::2,024
Genes (RNA)::74
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::191
CDSs (without protein)::191
Pseudo Genes (ambiguous residues)::0 of 191
Pseudo Genes (frameshifted)::86 of 191
Pseudo Genes (incomplete)::91 of 191
Pseudo Genes (internal stop)::69 of 191
Pseudo Genes (multiple problems)::49 of 191
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,227,883
Total ungapped length2,227,883
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_033096075.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP026916.1=NZ_AP026916.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,227,883

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pneumoniaeStreptococcus pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6586.2791.05
Best-match type98.6586.2791.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna