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ASM3622004v1

Organism name:
Geobacillus stearothermophilus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NRS-1484
BioSample:
SAMN33769943
BioProject:
PRJNA802201
Submitter:
USDA-ARS-NCAUR
Date:
2024/01/26
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_036220045.1 (latest)
RefSeq assembly accession:
GCF_036220045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JARMST01
Assembly method:
CLC NGS Cell v. 21
Expected final version:
yes
Genome coverage:
830x
Sequencing technology:
Illumina NovaSeq

IDs: 21155151 [UID] 53219738 [GenBank] 53251678 [RefSeq]

See Genome Information for Geobacillus stearothermophilus

There are 67 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::03/21/2023 21:43:10
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Annotation Software revision::6.4
Genes (total)::3,115
CDSs (total)::3,014
Genes (coding)::2,806
CDSs (with protein)::2,806
Genes (RNA)::101
rRNAs::7, 1, 3 (5S, 16S, 23S)
complete rRNAs::7, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::85
ncRNAs::5
Pseudo Genes (total)::208
CDSs (without protein)::208
Pseudo Genes (ambiguous residues)::0 of 208
Pseudo Genes (frameshifted)::74 of 208
Pseudo Genes (incomplete)::153 of 208
Pseudo Genes (internal stop)::24 of 208
Pseudo Genes (multiple problems)::38 of 208
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,789,835
Total ungapped length2,789,513
Gaps between scaffolds0
Number of scaffolds205
Scaffold N5028,855
Scaffold L5029
Number of contigs212
Contig N5028,855
Contig L5029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)205

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,789,8352052,789,51328,85570

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Geobacillus stearothermophilusGeobacillus stearothermophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_030369615.1Geobacillus stearothermophilus ATCC 12980type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030369615.1Geobacillus stearothermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5491.5189.23
Best-match type99.5491.5189.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna