U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM3843175v1

Organism name:
Streptococcus pneumoniae (firmicutes)
Taxonomy check:
OK
BioSample:
SAMN36766242
BioProject:
PRJNA1000275
Submitter:
National Health Research Institutes
Date:
2024/04/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_038431755.1 (latest)
RefSeq assembly accession:
GCF_038431755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CCBGpipe v. 1
Genome coverage:
80x
Sequencing technology:
Oxford Nanopore MinION and Illumina iSeq

IDs: 56725358 [UID] 56725358 [GenBank] 56740208 [RefSeq]

See Genome Information for Streptococcus pneumoniae

There are 46012 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_038431755.1-RS_2024_04_24
Annotation Date::04/24/2024 00:02:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,206
CDSs (total)::2,133
Genes (coding)::1,979
CDSs (with protein)::1,979
Genes (RNA)::73
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::154
CDSs (without protein)::154
Pseudo Genes (ambiguous residues)::0 of 154
Pseudo Genes (frameshifted)::79 of 154
Pseudo Genes (incomplete)::64 of 154
Pseudo Genes (internal stop)::63 of 154
Pseudo Genes (multiple problems)::43 of 154
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,207,415
Total ungapped length2,207,415
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_038431754.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP131712.1=NZ_CP131712.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,207,415

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pneumoniaeStreptococcus pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457635.1Streptococcus pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6686.8090.76
Best-match type98.6686.8090.76

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna