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ASM3844779v1

Organism name:
Clostridium cochlearium (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NMP301
BioSample:
SAMN39099393
BioProject:
PRJNA1056462
Submitter:
Kamdhenu University
Date:
2024/04/24
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_038447795.1 (latest)
RefSeq assembly accession:
GCF_038447795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JBCECZ01
Assembly method:
SPAdes v. Dec-2023
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina MiSeq

IDs: 22442181 [UID] 56750508 [GenBank] 56841848 [RefSeq]

See Genome Information for Clostridium cochlearium

There are 16 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/19/2024 09:38:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,324
CDSs (total)::2,230
Genes (coding)::2,200
CDSs (with protein)::2,200
Genes (RNA)::94
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::68
ncRNAs::5
Pseudo Genes (total)::30
CDSs (without protein)::30
Pseudo Genes (ambiguous residues)::0 of 30
Pseudo Genes (frameshifted)::15 of 30
Pseudo Genes (incomplete)::18 of 30
Pseudo Genes (internal stop)::5 of 30
Pseudo Genes (multiple problems)::8 of 30
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,292,177
Total ungapped length2,292,177
Number of contigs104
Contig N50276,006
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,292,1771042,292,177276,00600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium cochleariumClostridium cochlearium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900187165.1Clostridium cochleariumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900187165.1Clostridium cochleariumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2399.5193.66
Best-match type99.2399.5193.66

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna