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52592_C01

Organism name:
Yersinia pseudotuberculosis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC8580
BioSample:
SAMEA26397418
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900460685.1 (latest)
RefSeq assembly accession:
GCF_900460685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UHJC01
Genome coverage:
100x

IDs: 1842561 [UID] 6981668 [GenBank] 7004238 [RefSeq]

See Genome Information for Yersinia pseudotuberculosis

There are 329 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,029,729
Total ungapped length5,029,729
Number of contigs2
Contig N504,980,292
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,029,72925,029,7294,980,29200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia pseudotuberculosisYersinia pseudotuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637475.1Yersinia pseudotuberculosissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637475.1Yersinia pseudotuberculosissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3484.1491.79
Best-match type97.3484.1491.79

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna