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48269_B01

Organism name:
Clostridium perfringens (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC2837
BioSample:
SAMEA4040483
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/06/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_900478015.1 (latest)
RefSeq assembly accession:
GCF_900478015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
258x

IDs: 1771931 [UID] 6716308 [GenBank] 6723958 [RefSeq]

See Genome Information for Clostridium perfringens

There are 1876 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_900478015.1-RS_2024_03_29
Annotation Date::03/29/2024 11:52:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,997
CDSs (total)::2,868
Genes (coding)::2,848
CDSs (with protein)::2,848
Genes (RNA)::129
rRNAs::10, 10, 10 (5S, 16S, 23S)
complete rRNAs::10, 10, 10 (5S, 16S, 23S)
tRNAs::95
ncRNAs::4
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::11 of 20
Pseudo Genes (incomplete)::11 of 20
Pseudo Genes (internal stop)::3 of 20
Pseudo Genes (multiple problems)::4 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,273,517
Total ungapped length3,273,517
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900478014.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1LS483461.1=NZ_LS483461.1

Assembly statistics

MoleculeTotal
Length
Chromosome 13,273,517

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium perfringensClostridium perfringens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016027375.1Clostridium perfringenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016027375.1Clostridium perfringenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5891.1388.91
Best-match type98.5891.1388.91

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna