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56433_G01

Organism name:
Serratia quinivorans (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC13188
BioSample:
SAMEA104200687
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/12/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_900638135.1 (latest)
RefSeq assembly accession:
GCF_900638135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 2181031 [UID] 8124418 [GenBank] 8156298 [RefSeq]

See Genome Information for Serratia quinivorans

There are 47 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/08/2024 02:14:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,045
CDSs (total)::4,928
Genes (coding)::4,872
CDSs (with protein)::4,872
Genes (RNA)::117
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::84
ncRNAs::11
Pseudo Genes (total)::56
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::28 of 56
Pseudo Genes (incomplete)::34 of 56
Pseudo Genes (internal stop)::9 of 56
Pseudo Genes (multiple problems)::12 of 56
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,376,744
Total ungapped length5,376,744
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900638134.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR134494.1=NZ_LR134494.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,376,744

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia quinivoransSerratia quinivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900457075.1Serratia quinivoranssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900457075.1Serratia quinivoranssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7994.0386.05
Best-match type98.7994.0386.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna