U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



56553_A01

Organism name:
Nocardiopsis dassonvillei (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC10488
BioSample:
SAMEA104167184
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/12/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900638215.1 (latest)
RefSeq assembly accession:
GCF_900638215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 2181111 [UID] 8124578 [GenBank] 8160158 [RefSeq]

See Genome Information for Nocardiopsis dassonvillei

There are 8 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/13/2024 03:06:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,592
CDSs (total)::5,517
Genes (coding)::5,479
CDSs (with protein)::5,479
Genes (RNA)::75
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::38
CDSs (without protein)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::15 of 38
Pseudo Genes (incomplete)::25 of 38
Pseudo Genes (internal stop)::3 of 38
Pseudo Genes (multiple problems)::4 of 38
CRISPR Arrays::8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,541,269
Total ungapped length6,541,269
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900638214.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR134501.1=NZ_LR134501.1

Assembly statistics

MoleculeTotal
Length
Chromosome 6,541,269

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nocardiopsis dassonvilleiNocardiopsis dassonvillei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000092985.1Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000092985.1Nocardiopsis dassonvilleitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9199.88
Best-match type99.9999.9199.88

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna