fDenClu1.1

This assembly has been replaced. See current version

Organism name:: Denticeps clupeoides (denticle herring)
BioSample:: SAMEA104129917
BioProject:: PRJEB31545
Submitter:: SC
Date:: 2019/03/16
Assembly type:: haploid (principal pseudohaplotype of diploid)
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_900700375.1 (replaced)
RefSeq assembly accession:: GCF_900700375.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: CAADHS01
Genome coverage:: 63x

IDs: 2469041 [UID] 9061338 [GenBank] 9338338 [RefSeq]

See Genome Information for Denticeps clupeoides

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_900700375.2	n/a	n/a	fDenClu1.2	Chromosome	Latest GenBank
GCA_900700375.1	=	GCF_900700375.1	fDenClu1.1	Chromosome	Latest RefSeq, Replaced GenBank

Comment

Global statistics

Total sequence length	567,401,054
Total ungapped length	562,752,667
Gaps between scaffolds	0
Number of scaffolds	460
Scaffold N50	22,793,177
Scaffold L50	9
Number of contigs	924
Contig N50	3,059,612
Contig L50	53
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	460

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	LR535813.1	=	NC_041707.1	0
Chromosome 2	LR535814.1	=	NC_041708.1	0
Chromosome 3	LR535815.1	=	NC_041709.1	0
Chromosome 4	LR535816.1	=	NC_041710.1	0
Chromosome 5	LR535817.1	=	NC_041711.1	0
Chromosome 6	LR535818.1	=	NC_041712.1	0
Chromosome 7	LR535819.1	=	NC_041713.1	0
Chromosome 8	LR535820.1	=	NC_041714.1	0
Chromosome 9	LR535821.1	=	NC_041715.1	0
Chromosome 10	LR535822.1	=	NC_041716.1	0
Chromosome 11	LR535823.1	=	NC_041717.1	0
Chromosome 12	LR535824.1	=	NC_041718.1	0
Chromosome 13	LR535825.1	=	NC_041719.1	0
Chromosome 14	LR535826.1	=	NC_041720.1	0
Chromosome 15	LR535827.1	=	NC_041721.1	0
Chromosome 16	LR535828.1	=	NC_041722.1	0
Chromosome 17	LR535829.1	=	NC_041723.1	0
Chromosome 18	LR535830.1	=	NC_041724.1	0
Chromosome 19	LR535831.1	=	NC_041725.1	0
Chromosome 20	LR535832.1	=	NC_041726.1	0
unplaced	n/a	n/a	n/a	440

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	567,401,054	460	562,752,667	22,793,177	464
Chromosome 1	42,171,479	1	41,616,728	42,171,479	37
Chromosome 2	39,020,476	1	38,808,555	39,020,476	16
Chromosome 3	36,907,352	1	36,773,899	36,907,352	20
Chromosome 4	35,364,899	1	35,196,411	35,364,899	22
Chromosome 5	34,205,620	1	33,971,464	34,205,620	23
Chromosome 6	25,515,720	1	25,514,586	25,515,720	14
Chromosome 7	25,339,795	1	25,317,596	25,339,795	18
Chromosome 8	23,378,448	1	23,088,269	23,378,448	17
Chromosome 9	22,793,177	1	22,787,400	22,793,177	18
Chromosome 10	22,713,814	1	22,593,862	22,713,814	17
Chromosome 11	22,541,512	1	22,540,763	22,541,512	15
Chromosome 12	22,537,163	1	22,294,121	22,537,163	17
Chromosome 13	21,794,296	1	21,633,162	21,794,296	14
Chromosome 14	21,670,620	1	20,520,582	21,670,620	19
Chromosome 15	21,430,986	1	21,430,021	21,430,986	13
Chromosome 16	20,964,857	1	20,963,966	20,964,857	13
Chromosome 17	20,348,767	1	20,330,306	20,348,767	16
Chromosome 18	19,762,496	1	19,687,922	19,762,496	11
Chromosome 19	19,707,071	1	19,706,307	19,707,071	8
Chromosome 20	19,295,934	1	18,323,107	19,295,934	20
unplaced	49,936,572	440	49,653,640	161,983	116

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fDenClu1.1

See Genome Information for Denticeps clupeoides

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

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