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UHGG_MGYG-HGUT-02531

Organism name:
Butyrivibrio fibrisolvens (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
MGYG-HGUT-02531
BioSample:
SAMEA5852036
BioProject:
PRJEB33885
Submitter:
EMG
Date:
2019/08/10
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_902388015.1 (latest)
RefSeq assembly accession:
GCF_902388015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
10x

IDs: 4353311 [UID] 13240008 [GenBank] 26181828 [RefSeq]

See Genome Information for Butyrivibrio fibrisolvens

There are 12 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/31/2020 03:13:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,161
CDSs (total)::3,097
Genes (coding)::2,775
CDSs (with protein)::2,775
Genes (RNA)::64
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::322
CDSs (without protein)::322
Pseudo Genes (ambiguous residues)::1 of 322
Pseudo Genes (frameshifted)::301 of 322
Pseudo Genes (incomplete)::24 of 322
Pseudo Genes (internal stop)::9 of 322
Pseudo Genes (multiple problems)::13 of 322
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,164,379
Total ungapped length3,116,873
Gaps between scaffolds0
Number of scaffolds1
Scaffold N503,164,379
Scaffold L501
Number of contigs42
Contig N50184,380
Contig L508
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_902388014.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR699013.1=NZ_LR699013.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 3,164,37913,116,8733,164,379410
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