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IDs: 6068741 [UID] 17261008 [GenBank] 19943038 [RefSeq]
The assembly iAphHyp1.1 is based on 50x PacBio data, 61x 10X Genomics Chromium data, and 81x Arima Hi-C data from a separate individual iAphHyp4 generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: ... initial PacBio assembly generation with Falcon-unzip, retained haplotig identification with purge_dups, 10X based scaffolding with scaff10x, Hi-C based scaffolding with SALSA2, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size. more
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