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Listeria_monocytogenes_strain_RO15

Organism name:
Listeria monocytogenes (firmicutes)
Taxonomy check:
OK
Isolate:
Listeria monocytogenes RO15 genome
BioSample:
SAMEA6636411
BioProject:
PRJEB35939
Submitter:
Institute of Biotechnology, University of Helsinki
Date:
2020/04/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_902827145.1 (latest)
RefSeq assembly accession:
GCF_902827145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CADEHJ01
Genome coverage:
308x

IDs: 7050571 [UID] 19358248 [GenBank] 20098858 [RefSeq]

See Genome Information for Listeria monocytogenes

There are 60462 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,081,318
Total ungapped length3,081,318
Number of contigs2
Contig N503,042,507
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,081,31823,081,3183,042,50700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Listeria monocytogenesListeria monocytogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900187225.1Listeria monocytogenestype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900187225.1Listeria monocytogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8390.9697.84
Best-match type98.8390.9697.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna