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fTreBer1.1

Organism name:
Trematomus bernacchii (emerald rockcod)
BioSample:
SAMEA104132834
BioProject:
PRJEB37642
Submitter:
SC
Date:
2020/04/15
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_902827165.1 (latest)
RefSeq assembly accession:
GCF_902827165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CADEHM01
Genome coverage:
46x
Linked assembly:
GCA_902827105.1 (alternate pseudohaplotype of diploid)

IDs: 6931591 [UID] 19128688 [GenBank] 19358688 [RefSeq]

See Genome Information for Trematomus bernacchii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The assembly fTreBer1.1 is based on 46x PacBio data and 53x 10X Genomics Chromium data generated at the Wellcome Sanger Institute. The assembly process included the following sequence of steps: initial PacBio assembly generation with Falcon-unzip, retained haplotig identification ... with Purge Haplotigs, 10X based scaffolding with scaff10x, Arrow polishing, and two rounds of FreeBayes polishing. Finally, the assembly was analysed and manually improved using gEVAL, and further retained haplotigs were identified using purge_dups.  more

Global statistics

Total sequence length867,125,071
Total ungapped length867,007,390
Gaps between scaffolds0
Number of scaffolds864
Scaffold N508,748,152
Scaffold L5027
Number of contigs1,793
Contig N501,402,669
Contig L50160
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)864

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced867,125,071864867,007,3908,748,1529290