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Source database (GenBank or RefSeq) File type

MorexV3_pseudomolecules_assembly

Organism name:

Hordeum vulgare subsp. vulgare (domesticated barley)

BioSample:

SAMEA7384724

BioProject:

PRJEB40589

Submitter:

Leibniz Institute of Plant Genetics and Crop Plant Research

Date:

2021/04/01

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_904849725.1 (latest)

RefSeq assembly accession:

GCF_904849725.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

CAJHDD01

Genome coverage:

25x

IDs: 9687521 [UID] 25914238 [GenBank] 29876468 [RefSeq]

See Genome Information for Hordeum vulgare

Pathogen Detection Resources

There are 186 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_904849725.1	≠	GCF_904849725.1	MorexV3_pseudomolecules_assembly	Chromosome	Latest GenBank, Latest RefSeq

Comment

The construction of the PacBio long-read barley Morex reference assembly proceeded in three steps: (i) scaffolding the CCS_Canu assembly (PRJEB40581) with Bionano contigs; (ii) removal of small redundant sequences; (iii) filling gaps in scaffolds with ONT_smartdenovo contigs and (iv) ... ordering and orienting scaffolds into chromosomal pseudomolecules.  more

Global statistics

Total sequence length	4,225,713,981
Total ungapped length	4,224,388,187
Gaps between scaffolds	0
Number of scaffolds	291
Scaffold N50	610,333,535
Scaffold L50	4
Number of contigs	453
Contig N50	69,630,691
Contig L50	15
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	291

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1H	LR890096.1	=	NC_058518.1	0
Chromosome 2H	LR890097.1	=	NC_058519.1	0
Chromosome 3H	LR890098.1	=	NC_058520.1	0
Chromosome 4H	LR890099.1	=	NC_058521.1	0
Chromosome 5H	LR890100.1	=	NC_058522.1	0
Chromosome 6H	LR890101.1	=	NC_058523.1	0
Chromosome 7H	LR890102.1	=	NC_058524.1	0
unplaced	n/a	n/a	n/a	283

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	4,225,577,519	290	4,224,251,725	610,333,535	162
Chromosome 1H	516,505,932	1	516,367,588	516,505,932	17
Chromosome 2H	665,585,731	1	665,490,063	665,585,731	17
Chromosome 3H	621,516,506	1	621,218,888	621,516,506	30
Chromosome 4H	610,333,535	1	609,795,818	610,333,535	41
Chromosome 5H	588,218,686	1	588,167,943	588,218,686	17
Chromosome 6H	561,794,515	1	561,607,832	561,794,515	24
Chromosome 7H	632,540,561	1	632,521,566	632,540,561	14
unplaced	29,082,053	283	29,082,027	106,360	2

Assembly

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MorexV3_pseudomolecules_assembly

See Genome Information for Hordeum vulgare

Pathogen Detection Resources

There are 186 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear