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SJC1052

Organism name:
Serratia marcescens (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SJC1052
BioSample:
SAMEA13201021
BioProject:
PRJEB51113
Submitter:
Wellcome Sanger Institute
Date:
2022/08/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_946411625.1 (latest)
RefSeq assembly accession:
GCF_946411625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Prokka
Genome coverage:
100x
Sequencing technology:
SLX

IDs: 14438941 [UID] 37461728 [GenBank] 46859418 [RefSeq]

See Genome Information for Serratia marcescens

There are 2583 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/02/2023 08:21:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,245
CDSs (total)::5,114
Genes (coding)::5,041
CDSs (with protein)::5,041
Genes (RNA)::131
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::90
ncRNAs::19
Pseudo Genes (total)::74
CDSs (without protein)::73
Pseudo Genes (ambiguous residues)::0 of 74
Pseudo Genes (frameshifted)::29 of 74
Pseudo Genes (incomplete)::44 of 74
Pseudo Genes (internal stop)::15 of 74
Pseudo Genes (multiple problems)::11 of 74
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,453,486
Total ungapped length5,453,486
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_946411624.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome OX291705.1=NZ_OX291705.1
Plasmid 2OX291706.1=NZ_OX291706.1
Plasmid 3OX291707.1=NZ_OX291707.1
Plasmid 4OX291708.1=NZ_OX291708.1

Assembly statistics

MoleculeTotal
Length
All5,453,486
Chromosome 5,433,688
Plasmid 212,879
Plasmid 33,696
Plasmid 43,223

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia marcescensSerratia marcescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017301275.1Serratia marcescens subsp. marcescens ATCC 13880type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017301275.1Serratia marcescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.2480.5485.09
Best-match type95.2480.5485.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna