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IMG-taxon 2585428075 annotated assembly

Organism name:
Succinivibrio dextrinosolvens DSM 3072 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 3072
BioSample:
SAMN02745213
BioProject:
PRJEB19576
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/03/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900167015.1 (latest)
RefSeq assembly accession:
GCF_900167015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FUXX01
Genome coverage:
133x

IDs: 1021761 [UID] 4187008 [GenBank] 4195538 [RefSeq]

See Genome Information for Succinivibrio dextrinosolvens

There are 13 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,666,783
Total ungapped length2,666,783
Number of contigs104
Contig N5048,275
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,666,7831042,666,78348,27500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Succinivibrio dextrinosolvens DSM 3072Succinivibrio dextrinosolvens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000188195.1Succinatimonas hippeisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.320.130.15

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected