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Leaf83

Organism name:
Pseudomonas sp. Leaf83 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Leaf83
BioSample:
SAMN04151619
BioProject:
PRJNA297956
Submitter:
Max Planck Institute for Plant Breeding Research
Date:
2015/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001422075.1 (latest)
RefSeq assembly accession:
GCF_001422075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMMB01
Assembly method:
A5 v. 20140604
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 572481 [UID] 2562048 [GenBank] 2573208 [RefSeq]

See Genome Information for Pseudomonas sp. Leaf83

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2015 17:41:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,058
CDS::4,918
Pseudo Genes::72
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::64
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,538,830
Total ungapped length5,538,753
Gaps between scaffolds0
Number of scaffolds39
Scaffold N50416,534
Scaffold L505
Number of contigs42
Contig N50312,613
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,538,830395,538,753416,53430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas sp. Leaf83Pseudomonas sp. Leaf83

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_012986985.1Pseudomonas chengduensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7086.8588.33

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna