U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Leaf306

Organism name:
Rhizobium sp. Leaf306 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Leaf306
BioSample:
SAMN04151720
BioProject:
PRJNA297956
Submitter:
Max Planck Institute for Plant Breeding Research
Date:
2015/11/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001423425.1 (latest)
RefSeq assembly accession:
GCF_001423425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMNX01
Assembly method:
A5 v. 20140605
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 573151 [UID] 2563398 [GenBank] 3140818 [RefSeq]

See Genome Information for Rhizobium sp. Leaf306

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2015 20:39:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,669
CDS::4,551
Pseudo Genes::65
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::49
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,009,159
Total ungapped length5,009,159
Number of contigs9
Contig N501,176,853
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,009,15995,009,1591,176,85300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhizobium sp. Leaf306Rhizobium sp. Leaf306

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006335145.1Rhizobium smilacinaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.5824.5920.51

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna