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ASM1192v1

Organism name:
Staphylococcus epidermidis RP62A (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: RP62A
BioSample:
SAMN02603975
BioProject:
PRJNA64
Submitter:
TIGR
Date:
2005/01/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000011925.1 (latest)
RefSeq assembly accession:
GCF_000011925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 33028 [UID] 12728 [GenBank] 33028 [RefSeq]

See Genome Information for Staphylococcus epidermidis

There are 4842 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000011925.1-RS_2024_03_27
Annotation Date::03/27/2024 01:05:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,532
CDSs (total)::2,448
Genes (coding)::2,377
CDSs (with protein)::2,377
Genes (RNA)::84
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::71
CDSs (without protein)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::34 of 71
Pseudo Genes (incomplete)::45 of 71
Pseudo Genes (internal stop)::24 of 71
Pseudo Genes (multiple problems)::25 of 71
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,643,840
Total ungapped length2,643,840
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000011935.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000029.1=NC_002976.3
Plasmid pSERPCP000028.1=NC_006663.1

Assembly statistics

MoleculeTotal
Length
All2,643,840
Chromosome 2,616,530
Plasmid pSERP27,310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidis RP62AStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006094375.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094375.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3688.6494.08
Best-match type99.3688.6494.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna