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ASM303491v1

Organism name:
Mesorhizobium helmanticense (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CSLC115N
BioSample:
SAMN08802955
BioProject:
PRJNA445923
Submitter:
Instituto de Biotecnologia y Biologia Molecular
Date:
2018/04/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003034915.1 (latest)
RefSeq assembly accession:
GCF_003034915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PZJX01
Assembly method:
Newbler v. 2.8
Expected final version:
no
Genome coverage:
165.0x
Sequencing technology:
Illumina HiSeq

IDs: 1661681 [UID] 6333258 [GenBank] 6385138 [RefSeq]

See Genome Information for Mesorhizobium helmanticense

History (Show revision history)

Comment

Bacteria and source DNA available from the BCCM/LMG (LMG 29734) Bacteria Collection.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/31/2018 11:16:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,746
CDS (total)::6,691
Genes (coding)::6,430
CDS (coding)::6,430
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::261
Pseudo Genes (ambiguous residues)::0 of 261
Pseudo Genes (frameshifted)::141 of 261
Pseudo Genes (incomplete)::169 of 261
Pseudo Genes (internal stop)::38 of 261
Pseudo Genes (multiple problems)::78 of 261
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,879,637
Total ungapped length6,879,637
Number of contigs145
Contig N50181,688
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)145

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,879,6371456,879,637181,68800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mesorhizobium helmanticenseMesorhizobium helmanticense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002529485.1Mesorhizobium sanjuaniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.9279.2085.15

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected