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ASM178239v1

Organism name:
Candidatus Levybacteria bacterium RIFCSPHIGHO2_12_FULL_40_44 (bacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04315622
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001782395.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MFOL01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 824101 [UID] 3538448 [GenBank]

See Genome Information for Candidatus Levybacteria bacterium RIFCSPHIGHO2_12_FULL_40_44

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/07/2016 15:29:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::806
CDS (total)::768
Genes (coding)::724
CDS (coding)::724
Genes (RNA)::38
rRNAs::1 (23S)
complete rRNAs::
partial rRNAs::1 (23S)
tRNAs::36
ncRNAs::1
Pseudo Genes (total)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::3 of 44
Pseudo Genes (incomplete)::39 of 44
Pseudo Genes (internal stop)::2 of 44
##Genome-Annotation-Data-END##

Global statistics

Total sequence length704,736
Total ungapped length704,676
Gaps between scaffolds0
Number of scaffolds45
Scaffold N5020,184
Scaffold L5013
Number of contigs47
Contig N5020,184
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced704,73645704,67620,18420

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Levybacteria bacterium RIFCSPHIGHO2_12_FULL_40_44Candidatus Levybacteria bacterium RIFCSPHIGHO2_12_FULL_40_44

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana