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ASM338518v1

Organism name:
Amycolatopsis palatopharyngis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:44832
Infraspecific name:
Strain: DSM 44832
BioSample:
SAMN08435654
BioProject:
PRJNA432154
Submitter:
Northumbria University
Date:
2018/08/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003385185.1 (latest)
RefSeq assembly accession:
GCF_003385185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PQHZ01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
yes
Genome coverage:
181x
Sequencing technology:
Illumina MiSeq

IDs: 1863211 [UID] 7072958 [GenBank] 7096318 [RefSeq]

See Genome Information for Amycolatopsis palatopharyngis

History (Show revision history)

Comment

Global statistics

Total sequence length7,012,383
Total ungapped length7,012,383
Number of contigs131
Contig N50113,221
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)131

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,012,3831317,012,383113,22100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Amycolatopsis palatopharyngisAmycolatopsis palatopharyngis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900111885.1Amycolatopsis marinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.9965.1865.09

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected