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ASM287361v1

Organism name:
Shewanella sp. 10N.286.51.B7 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 10N.286.51.B7
BioSample:
SAMN05418188
BioProject:
PRJNA328102
Submitter:
Massachusetts Institute of Technology
Date:
2018/01/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002873615.1 (latest)
RefSeq assembly accession:
GCF_002873615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MCUF01
Assembly method:
CLC GWB v. 8.0
Genome coverage:
68x
Sequencing technology:
Illumina HiSeq

IDs: 1516941 [UID] 5866368 [GenBank] 5899318 [RefSeq]

See Genome Information for Shewanella sp. 10N.286.51.B7

History (Show revision history)

Comment

Source DNA available from Martin Polz, 77 Massachusetts Ave., Cambridge, MA
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2016 11:14:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,083
CDS (total)::3,999
Genes (coding)::3,937
CDS (coding)::3,937
Genes (RNA)::84
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::75
ncRNAs::4
Pseudo Genes (total)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::11 of 62
Pseudo Genes (incomplete)::44 of 62
Pseudo Genes (internal stop)::11 of 62
Pseudo Genes (multiple problems)::4 of 62
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,861,069
Total ungapped length4,828,306
Gaps between scaffolds0
Number of scaffolds108
Scaffold N5097,968
Scaffold L5018
Number of contigs150
Contig N5073,930
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)108

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,861,0691084,828,30697,968420

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shewanella sp. 10N.286.51.B7Shewanella sp. 10N.286.51.B7

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023283985.1Shewanella electrodiphilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.1591.2684.28

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna