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ASM287568v1

Organism name:
Vibrio sp. 10N.261.45.E11 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 10N.261.45.E11
BioSample:
SAMN05418036
BioProject:
PRJNA328102
Submitter:
Massachusetts Institute of Technology
Date:
2018/01/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002875685.1 (latest)
RefSeq assembly accession:
GCF_002875685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MDAB01
Assembly method:
CLC GWB v. 8.0
Genome coverage:
111x
Sequencing technology:
Illumina HiSeq

IDs: 1518231 [UID] 5870428 [GenBank] 5896418 [RefSeq]

See Genome Information for Vibrio sp. 10N.261.45.E11

History (Show revision history)

Comment

Source DNA available from Martin Polz, 77 Massachusetts Ave., Cambridge, MA
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2016 15:34:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,950
CDS (total)::4,865
Genes (coding)::4,718
CDS (coding)::4,718
Genes (RNA)::85
rRNAs::3, 1, 2 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::75
ncRNAs::4
Pseudo Genes (total)::147
Pseudo Genes (ambiguous residues)::4 of 147
Pseudo Genes (frameshifted)::33 of 147
Pseudo Genes (incomplete)::98 of 147
Pseudo Genes (internal stop)::26 of 147
Pseudo Genes (multiple problems)::13 of 147
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,525,016
Total ungapped length5,524,397
Gaps between scaffolds0
Number of scaffolds213
Scaffold N5098,478
Scaffold L5018
Number of contigs224
Contig N5097,939
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)213

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,525,0162135,524,39798,478110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio sp. 10N.261.45.E11Vibrio sp. 10N.261.45.E11

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024347375.1Vibrio coralliirubritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.2775.2872.41

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna