Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM284433v1

Organism name:

Haloarcula taiwanensis (euryarchaeotes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: Taiwanensis

BioSample:

SAMN06200074

BioProject:

PRJNA360060

Submitter:

National Taiwan University

Date:

2017/12/18

Assembly type:

Assembly level:

Complete Genome

Genome representation:

full

Excluded from RefSeq:

RefSeq annotation failed

GenBank assembly accession:

GCA_002844335.1 (latest)

RefSeq assembly accession:

GCF_002844335.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

Assembly method:

HGAP v. 2

Expected final version:

yes

Genome coverage:

85.0x

Sequencing technology:

PacBio

IDs: 1492601 [UID] 5797258 [GenBank] 5812518 [RefSeq]

See Genome Information for Haloarcula taiwanensis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002844335.1	=	GCF_002844335.1	ASM284433v1	Complete Genome	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Chii-Shen Yang, NTU.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::01/10/2017 13:29:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,730
CDS (total)::3,673
Genes (coding)::3,614
CDS (coding)::3,614
Genes (RNA)::57
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::2
Pseudo Genes (total)::59
Pseudo Genes (ambiguous residues)::0 of 59
Pseudo Genes (frameshifted)::31 of 59
Pseudo Genes (incomplete)::27 of 59
Pseudo Genes (internal stop)::10 of 59
Pseudo Genes (multiple problems)::9 of 59
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,721,706
Total ungapped length	3,721,706
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	CP019154.1	=	NZ_CP019154.1
Chromosome II	CP019155.1	=	NZ_CP019155.1
Plasmid pNYT1	CP019156.1	=	NZ_CP019156.1
Plasmid pNYT2	CP019157.1	=	NZ_CP019157.1

Molecule	Total Length
All	3,721,706
Chromosome I	2,966,258
Chromosome II	525,233
Plasmid pNYT1	129,893
Plasmid pNYT2	100,322

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	92.54	87.87	82.35

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM284433v1

See Genome Information for Haloarcula taiwanensis

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result