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ASM232882v1

Organism name:
Nitrospiraceae bacterium UBA2166 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
UBA2166
BioSample:
SAMN06450832
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002328825.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DCWI01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
14.98x
Sequencing technology:
Illumina

IDs: 1212821 [UID] 5050588 [GenBank]

See Genome Information for Nitrospiraceae bacterium UBA2166

History (Show revision history)

Comment

Global statistics

Total sequence length2,071,204
Total ungapped length2,051,815
Gaps between scaffolds0
Number of scaffolds127
Scaffold N5026,689
Scaffold L5025
Number of contigs187
Contig N5024,449
Contig L5029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)127

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,071,2041272,051,81526,689600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospiraceae bacterium UBA2166Nitrospiraceae bacterium UBA2166

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_032051675.1Candidatus Nitrospira neomarinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.130.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena