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ASM278857v1

Organism name:
Candidatus Pacearchaeota archaeon CG_4_9_14_0_2_um_filter_30_8 (archaea)
Taxonomy check:
Inconclusive
Isolate:
CG_4_9_14_0_2_um_filter_30_8
BioSample:
SAMN06659987
BioProject:
PRJNA362739
Submitter:
DOE Joint Genome Institute
Date:
2017/11/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002788575.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PFRO01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1447891 [UID] 5669518 [GenBank]

See Genome Information for Candidatus Pacearchaeota archaeon CG_4_9_14_0_2_um_filter_30_8

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/08/2017 06:07:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::605
CDS (total)::591
Genes (coding)::581
CDS (coding)::581
Genes (RNA)::14
tRNAs::13
ncRNAs::1
Pseudo Genes (total)::10
Pseudo Genes (ambiguous residues)::6 of 10
Pseudo Genes (frameshifted)::0 of 10
Pseudo Genes (incomplete)::4 of 10
Pseudo Genes (internal stop)::0 of 10
##Genome-Annotation-Data-END##

Global statistics

Total sequence length419,289
Total ungapped length415,842
Gaps between scaffolds0
Number of scaffolds62
Scaffold N507,113
Scaffold L5022
Number of contigs91
Contig N506,308
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)62

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced419,28962415,8427,113290

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Pacearchaeota archaeon CG_4_9_14_0_2_um_filter_30_8Candidatus Pacearchaeota archaeon CG_4_9_14_0_2_um_filter_30_8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana