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ASM276302v1

Organism name:
Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_24 (archaea)
Taxonomy check:
Inconclusive
Isolate:
CG10_big_fil_rev_8_21_14_0_10_32_24
BioSample:
SAMN06659461
BioProject:
PRJNA362739
Submitter:
None
Date:
2017/11/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002763025.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PCYG01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1435061 [UID] 5635578 [GenBank]

See Genome Information for Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_24

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/05/2017 18:35:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::845
CDS (total)::827
Genes (coding)::791
CDS (coding)::791
Genes (RNA)::18
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::16
ncRNAs::1
Pseudo Genes (total)::36
Pseudo Genes (ambiguous residues)::28 of 36
Pseudo Genes (frameshifted)::6 of 36
Pseudo Genes (incomplete)::8 of 36
Pseudo Genes (internal stop)::0 of 36
Pseudo Genes (multiple problems)::6 of 36
##Genome-Annotation-Data-END##

Global statistics

Total sequence length775,796
Total ungapped length772,967
Gaps between scaffolds0
Number of scaffolds84
Scaffold N5010,021
Scaffold L5026
Number of contigs175
Contig N506,425
Contig L5042
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced775,79684772,96710,021910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_24Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_32_24

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana