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Source database (GenBank or RefSeq) File type

ASM216769v1

Organism name:

Rhizobiales bacterium TMED29 (a-proteobacteria)

Taxonomy check:

Inconclusive

Isolate:

TMED29

BioSample:

SAMN06971883

BioProject:

PRJNA385857

Submitter:

Tara Oceans Consortium

Date:

2017/06/05

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_002167695.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

NHCI01

Assembly method:

Megahit v. 1.0.3; Minimus2 v. 3.1.0

Expected final version:

yes

Genome coverage:

Not Applicable

Sequencing technology:

Illumina HiSeq

IDs: 1118271 [UID] 4551748 [GenBank]

See Genome Information for Rhizobiales bacterium TMED29

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002167695.1	n/a	n/a	ASM216769v1	Contig	Latest GenBank

Comment

This genome was assembled from the publically available reads for the TARA Oceans Project deposited in the Sequence Read Archive (SRA) database with accessions ERS488346, ERS488330, ERS477998, ERS477979, ERS488509, ERS488486, ERS478040, ERS477953, ERS477931, ERS488147, ERS488119, and ERS478017.
Annotation was added ... by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/19/2017 08:32:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,688
CDS (total)::1,648
Genes (coding)::1,603
CDS (coding)::1,603
Genes (RNA)::40
tRNAs::36
ncRNAs::4
Pseudo Genes (total)::45
Pseudo Genes (ambiguous residues)::26 of 45
Pseudo Genes (frameshifted)::14 of 45
Pseudo Genes (incomplete)::9 of 45
Pseudo Genes (internal stop)::3 of 45
Pseudo Genes (multiple problems)::7 of 45
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,652,246
Total ungapped length	1,652,246
Number of contigs	50
Contig N50	39,175
Contig L50	12
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	50

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.48	0.02	0.01

Assembly

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ASM216769v1

See Genome Information for Rhizobiales bacterium TMED29

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result