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Source database (GenBank or RefSeq) File type

ASM287837v1

Organism name:

Dictyoglomus sp. NZ13-RE01 (bacteria)

Taxonomy check:

Inconclusive

Isolate:

NZ13-RE01

BioSample:

SAMN07140561

BioProject:

PRJNA381623

Submitter:

Portland State University

Date:

2018/01/12

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome

GenBank assembly accession:

GCA_002878375.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

NIRF01

Assembly method:

IDBA-UD v. 1.1.0

Expected final version:

yes

Genome coverage:

104.0x

Sequencing technology:

Illumina HiSeq

IDs: 1520711 [UID] 5879148 [GenBank]

See Genome Information for Dictyoglomus sp. NZ13-RE01

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002878375.1	n/a	n/a	ASM287837v1	Contig	Latest GenBank

Comment

Bacteria and source DNA available from Anna-Louise Reysenbach Lab.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::06/12/2017 16:27:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,975
CDS (total)::1,920
Genes (coding)::1,870
CDS (coding)::1,870
Genes (RNA)::55
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::2, 2 (16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::50
Pseudo Genes (ambiguous residues)::0 of 50
Pseudo Genes (frameshifted)::32 of 50
Pseudo Genes (incomplete)::16 of 50
Pseudo Genes (internal stop)::11 of 50
Pseudo Genes (multiple problems)::8 of 50
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,927,013
Total ungapped length	1,927,013
Number of contigs	34
Contig N50	100,742
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	34

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	78.09	2.52	2.49

Assembly

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ASM287837v1

See Genome Information for Dictyoglomus sp. NZ13-RE01

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result