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ASM321311v1

Organism name:
Pelagibacteraceae bacterium AG-426-L23 (a-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
AG-426-L23
BioSample:
SAMN08886461
BioProject:
PRJNA445865
Submitter:
Massachusetts Institute of Technology
Date:
2018/06/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_003213115.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QCNU01
Assembly method:
SPAdes v. 3.0.0
Expected final version:
yes
Single-cell amplification:
WGA-X
Genome coverage:
2729x
Sequencing technology:
Illumina NextSeq 500

IDs: 1745431 [UID] 6633558 [GenBank]

See Genome Information for Pelagibacteraceae bacterium AG-426-L23

History (Show revision history)

Comment

Global statistics

Total sequence length987,485
Total ungapped length987,485
Number of contigs10
Contig N50637,871
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)10

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced987,48510987,485637,87100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pelagibacteraceae bacterium AG-426-L23Pelagibacteraceae bacterium AG-426-L23

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012345.1Candidatus Pelagibacter ubiquesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.501.270.96

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena