U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM328289v1

Organism name:
Pelagibacteraceae bacterium AG-325-F15 (a-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
AG-325-F15
BioSample:
SAMN08886041
BioProject:
PRJNA445865
Submitter:
Massachusetts Institute of Technology
Date:
2018/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_003282895.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QBYI01
Assembly method:
SPAdes v. 3.0.0
Expected final version:
yes
Single-cell amplification:
WGA-X
Genome coverage:
5046x
Sequencing technology:
Illumina NextSeq 500

IDs: 1778911 [UID] 6738658 [GenBank]

See Genome Information for Pelagibacteraceae bacterium AG-325-F15

History (Show revision history)

Comment

Global statistics

Total sequence length1,003,629
Total ungapped length1,003,629
Number of contigs75
Contig N5023,775
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)75

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,003,629751,003,62923,77500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pelagibacteraceae bacterium AG-325-F15Pelagibacteraceae bacterium AG-325-F15

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012345.1Candidatus Pelagibacter ubiquesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.9724.3118.64

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-lineage-matchna