U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM348106v1

Organism name:
Clostridium sp. TF11-13AC (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: TF11-13AC
BioSample:
SAMN09736946
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003481065.1 (latest)
RefSeq assembly accession:
GCF_003481065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUKJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1930901 [UID] 7310918 [GenBank] 7363018 [RefSeq]

See Genome Information for Clostridium sp. TF11-13AC

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 01:34:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,024
CDS (total)::2,960
Genes (coding)::2,836
CDS (coding)::2,836
Genes (RNA)::64
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::1 (16S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::124
Pseudo Genes (ambiguous residues)::3 of 124
Pseudo Genes (frameshifted)::29 of 124
Pseudo Genes (incomplete)::98 of 124
Pseudo Genes (internal stop)::13 of 124
Pseudo Genes (multiple problems)::17 of 124
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,201,111
Total ungapped length3,200,760
Gaps between scaffolds0
Number of scaffolds28
Scaffold N50482,746
Scaffold L503
Number of contigs40
Contig N50378,231
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,201,111283,200,760482,746120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. TF11-13ACClostridium sp. TF11-13AC

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024715.1Clostridium fessumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.4980.7978.92

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna