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ASM369565v1

Organism name:
Cyanobacteria bacterium J069 (cyanobacteria)
Taxonomy check:
Inconclusive
Isolate:
J069
BioSample:
SAMN10119969
BioProject:
PRJNA392119
Submitter:
California Institute of Technology
Date:
2018/10/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003695655.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
RFIF01
Assembly method:
MegaHit v. 1.1.2
Expected final version:
yes
Genome coverage:
26.08300518x
Sequencing technology:
Illumina HiSeq

IDs: 2036831 [UID] 7647558 [GenBank]

See Genome Information for Cyanobacteria bacterium J069

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/24/2018 18:59:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,132
CDS (total)::4,090
Genes (coding)::3,986
CDS (coding)::3,986
Genes (RNA)::42
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::37
ncRNAs::4
Pseudo Genes (total)::104
Pseudo Genes (ambiguous residues)::0 of 104
Pseudo Genes (frameshifted)::19 of 104
Pseudo Genes (incomplete)::71 of 104
Pseudo Genes (internal stop)::20 of 104
Pseudo Genes (multiple problems)::6 of 104
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,612,910
Total ungapped length4,612,910
Number of contigs626
Contig N508,587
Contig L50160
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)626

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,612,9106264,612,9108,58700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Cyanobacteria bacterium J069Cyanobacteria bacterium J069

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013177315.1Thermoleptolyngbya sichuanensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.7828.7424.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-lineage-matchna