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Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
URL -- http://www.jgi.doe.gov
JGI Project ID: 4003801
Source DNA available from DSMZ: DSM 10501 (http://www.dsmz.de)
Contacts: Cheryl Kerfeld (CKerfeld@lbl.gov)
 David Bruce (microbe@cuba.jgi-psf.org)
Annotation done ... by JGI-ORNL and JGI-PGF
UCLA undergraduates in LS187 contributed to the sequencing and analysis of this genome.
Also, students and faculty at the following schools participated in analysis of the A. degensii genome: Austin College (Professor Kelynne Reed); Bowling Green State University (Professor Zhaohui Xu); University of Missouri-Columbia, Professor Sharyn Freyermuth); The University of St. Thomas (Professor Jayna L. Ditty); St. Cloud State University (Professor Christopher Kvaal); University of Nebraska (Professor Cheryl Bailey); University of Southern Mississippi (Professor Sabine Heinhorst); (University of South Florida (Professor Kathleen Scott); Michigan State University (Professor Robert Britton); University of California, Los Angeles (Professor Erin Sanders-Lorenz); Northern Illinois University (Professor Rick Johns); Hiram College (Professors Stuart Gordon and Brad Goodner)
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000024605.1-RS_2024_04_08
Annotation Date::04/08/2024 02:02:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,250
CDSs (total)::2,193
Genes (coding)::2,156
CDSs (with protein)::2,156
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::37
CDSs (without protein)::37
Pseudo Genes (ambiguous residues)::0 of 37
Pseudo Genes (frameshifted)::13 of 37
Pseudo Genes (incomplete)::26 of 37
Pseudo Genes (internal stop)::3 of 37
Pseudo Genes (multiple problems)::5 of 37
CRISPR Arrays::8
##Genome-Annotation-Data-END##

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