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ASM1702v1

Organism name:
Clostridium botulinum A str. ATCC 19397 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 19397
BioSample:
SAMN02603532
BioProject:
PRJNA19517
Submitter:
Los Alamos National Laboratory
Date:
2007/07/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000017025.1 (latest)
RefSeq assembly accession:
GCF_000017025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 38128 [UID] 17828 [GenBank] 38128 [RefSeq]

See Genome Information for Clostridium botulinum

There are 1430 assemblies for this organism

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History (Show revision history)

Comment

The authors wish to acknowledge the Intelligence Technology Innovation Center for funding the sequencing and the NIH/NIAID for funding the annotation at the Pathema Bioinformatics Resource Center. For more information about this strain contact Theresa Smith, Integrated Toxicology, United ... States Army Medical Institute of Infectious Diseases, theresa.smith@amedd.army.mil.
The NIAID funded Bioinformatics Resource Center PathoSystems Resource Integration Center (PATRIC; http://patricbrc.vbi.vt.edu/>) is responsible for annotation updates of this record.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
The authors would like to gratefully acknowledge Dr. Ron Walters for sponsoring this genome sequencing and assembly project.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000017025.1-RS_2024_03_31
Annotation Date::03/31/2024 01:06:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,647
CDSs (total)::3,538
Genes (coding)::3,494
CDSs (with protein)::3,494
Genes (RNA)::109
rRNAs::8, 8, 8 (5S, 16S, 23S)
complete rRNAs::8, 8, 8 (5S, 16S, 23S)
tRNAs::81
ncRNAs::4
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::13 of 44
Pseudo Genes (incomplete)::32 of 44
Pseudo Genes (internal stop)::6 of 44
Pseudo Genes (multiple problems)::6 of 44
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,863,450
Total ungapped length3,863,450
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000017035.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000726.1=NC_009697.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,863,450

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium botulinum A str. ATCC 19397Clostridium botulinum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001276985.1Clostridium botulinumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001276985.1Clostridium botulinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8095.0694.43
Best-match type99.8095.0694.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna