Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM33088v1

Organism name:: Rhizobium tropici CIAT 899 (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: CIAT 899
BioSample:: SAMN02604105
BioProject:: PRJNA42391
Submitter:: Universidad Nacional Autonoma de Mexico
Date:: 2013/01/03
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000330885.1 (latest)
RefSeq assembly accession:: GCF_000330885.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 521818 [UID] 521738 [GenBank] 521818 [RefSeq]

See Genome Information for Rhizobium tropici

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000330885.1	=	GCF_000330885.1	ASM33088v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Source DNA is available from Esperanza Martinez-Romero (emartine@ccg.unam.mx)

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000330885.1-RS_2024_04_23
Annotation Date::04/23/2024 03:22:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,377
CDSs (total)::6,310
Genes (coding)::6,143
CDSs (with protein)::6,143
Genes (RNA)::67
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::167
CDSs (without protein)::167
Pseudo Genes (ambiguous residues)::0 of 167
Pseudo Genes (frameshifted)::72 of 167
Pseudo Genes (incomplete)::119 of 167
Pseudo Genes (internal stop)::21 of 167
Pseudo Genes (multiple problems)::38 of 167
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	6,686,334
Total ungapped length	6,686,334
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP004015.1	=	NC_020059.1
Plasmid pRtrCIAT899a	CP004016.1	=	NC_020060.1
Plasmid pRtrCIAT899b	CP004017.1	=	NC_020061.1
Plasmid pRtrCIAT899c	CP004018.1	=	NC_020062.1

Molecule	Total Length
All	6,686,334
Chromosome	3,837,060
Plasmid pRtrCIAT899a	216,610
Plasmid pRtrCIAT899b	549,467
Plasmid pRtrCIAT899c	2,083,197

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	89.83	72.45	72.03

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM33088v1

See Genome Information for Rhizobium tropici

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result