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ASM27906v1

Organism name:
Streptococcus pneumoniae 2081074 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 2081074
BioSample:
SAMN02471543
BioProject:
PRJNA59917
Submitter:
Academic Medical Center Amsterdam, The Netherlands
Date:
2012/07/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_000279065.1 (latest)
RefSeq assembly accession:
GCF_000279065.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ALBM01
Assembly method:
Newbler v. 2.3
Genome coverage:
14x
Sequencing technology:
454-titanium

IDs: 491188 [UID] 399988 [GenBank] 491188 [RefSeq]

See Genome Information for Streptococcus pneumoniae

There are 46013 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,063,116
Total ungapped length2,063,116
Number of contigs26
Contig N50101,664
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,063,116262,063,116101,66400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pneumoniae 2081074Streptococcus pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001679515.1Streptococcus pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001679515.1Streptococcus pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7491.3790.08
Best-match type98.7491.3790.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna