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Taxonomy

Pan troglodytes

Chimpanzee (Pan troglodytes) is a species of primate in the family Hominidae (great apes).

Taxonomy ID: 9598

Genomes Genes Genome Data Viewer

Search results

Items: 10

  • Filters activated: Latest, Exclude anomalous. Clear all to show 22 items.
1.

NHGRI_mPanTro3-v2.0_pri

Organism:
Pan troglodytes (chimpanzee)
Sex:
male
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2024/01/08
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028858775.2 (latest)
RefSeq assembly accession:
GCF_028858775.2 (latest)
IDs:
20632411 [UID] 52090828 [GenBank] 53522838 [RefSeq]

2.

Clint_PTR_hifiasm-v0.15.2.pri

Organism:
Pan troglodytes (chimpanzee)
Sex:
male
Submitter:
University of Washington
Date:
2023/05/30
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030128855.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16697871 [UID] 42948458 [GenBank]

3.

Clint_PTR_hifiasm-v0.15.2.alt

Organism:
Pan troglodytes (chimpanzee)
Sex:
male
Submitter:
University of Washington
Date:
2023/05/30
Assembly type:
alternate-pseudohaplotype (alternate pseudohaplotype of diploid)
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030128845.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16697861 [UID] 42948438 [GenBank]

4.

ASM32584v1

Organism:
Pan troglodytes (chimpanzee)
Submitter:
Chimpanzee Sequencing and Analysis Consortium
Date:
2003/12/05
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000325845.1 (latest)
RefSeq assembly accession:
n/a
IDs:
512758 [UID] 512758 [GenBank]

5.

Clint_PTRv2

Organism:
Pan troglodytes (chimpanzee)
Sex:
male
Submitter:
University of Washington
Date:
2018/01/19
Assembly level:
Chromosome
Genome representation:
full
Synonyms:
panTro6
GenBank assembly accession:
GCA_002880755.3 (latest)
RefSeq assembly accession:
GCF_002880755.1 (suppressed)
Excluded from RefSeq:
superseded by newer assembly for species
IDs:
1642151 [UID] 5907448 [GenBank] 6084388 [RefSeq]

6.

Pan_tro 3.0

Organism:
Pan troglodytes (chimpanzee)
Sex:
male
Submitter:
Chimpanzee Sequencing and Analysis Consortium
Date:
2016/05/03
Assembly level:
Chromosome
Genome representation:
full
Synonyms:
panTro5
GenBank assembly accession:
GCA_000001515.5 (latest)
RefSeq assembly accession:
GCF_000001515.7 (suppressed)
Excluded from RefSeq:
superseded by newer assembly for species
IDs:
733711 [UID] 3217758 [GenBank] 3241928 [RefSeq]

7.

NHGRI_mPanTro3-v2.0_alt

Organism:
Pan troglodytes (chimpanzee)
Sex:
male
Submitter:
National Human Genome Research Institute, National Institutes of Health
Date:
2024/01/08
Assembly type:
alternate-pseudohaplotype (alternate pseudohaplotype of diploid)
Assembly level:
Complete Genome
Genome representation:
partial
GenBank assembly accession:
GCA_028858805.2 (latest)
RefSeq assembly accession:
n/a
Excluded from RefSeq:
partial
IDs:
20632421 [UID] 52090818 [GenBank]

8.

ICC22C chr21

The International Chimpanzee Chromosome 22 Consortium assembly of chromosome 21 (22 in old numbering system)

Organism:
Pan troglodytes (chimpanzee)
Submitter:
The International Chimpanzee Chromosome 22 Consortium
Date:
2004/07/02
Assembly level:
Chromosome
Genome representation:
partial
GenBank assembly accession:
GCA_000090855.1 (latest)
RefSeq assembly accession:
n/a
Excluded from RefSeq:
partial
IDs:
202018 [UID] 202018 [GenBank]

9.

CCYSCv1

Organism:
Pan troglodytes verus (chimpanzee)
Submitter:
The Chimpanzee Chromosome Y Sequencing Consortium
Date:
2006/04/20
Assembly level:
Chromosome
Genome representation:
partial
GenBank assembly accession:
GCA_000002175.2 (latest)
RefSeq assembly accession:
GCF_000002175.1 (suppressed)
Excluded from RefSeq:
partial, superseded by newer assembly for species
IDs:
2618 [UID] 519258 [GenBank] 2618 [RefSeq]

10.

COX_ii

Organism:
Pan troglodytes (chimpanzee)
Submitter:
STANFORD UNIVERSITY
Date:
2017/02/12
Assembly level:
Scaffold
Genome representation:
partial
GenBank assembly accession:
GCA_900156565.1 (latest)
RefSeq assembly accession:
n/a
Excluded from RefSeq:
partial
IDs:
1559771 [UID] 6008798 [GenBank]

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